[Bioinfo-list] Re: Yet another AMR pipeline: AMRomics

Thank you, Mr Marco

We were looking for this type of workflow, which can also support nanopore reads

Thank you again

On Tue, 30 Jul 2024 at 11:27, Marco van Zwetselaar via Bioinfo List < bioinfo-list@seqshare.org> wrote:

AMRomics: a scalable workflow to analyze large microbial genome collections https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-024-10620-8

Two interesting features (vis a vis other pipelines): support for Nanopore reads, and construction of phylogenetic trees from core-genomes of the data.

Cheers, Marco

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