October 2024 - Bioinfo List - SeqShare Mailing Lists

Metagenomic assemblies tend to break around antibiotic resistance genes
by Marco van Zwetselaar 28 Oct '24

28 Oct '24

Abramova A, Karkman A, Bengtsson-Palme J. Metagenomic assemblies tend to break around antibiotic resistance genes. BMC Genomics. 2024;25: 959. doi:[10.1186/s12864-024-10876-0](https://doi.org/10.1186/s12864-024-10876-0) @Philip I seem to recall a paper from DTU on a tool that tried to solve precisely the issue your eastern neighbours stumble over in this paper? Cheers Marco

2 1

When less is more: sketching with minimizers in genomics
by Marco van Zwetselaar 26 Oct '24

26 Oct '24

Comprehensive overview article on minimizers and how they are used in current tools for alignment, assembly, etc. Great for catching up on some foundational bioinformatics. ;-) Ndiaye M, Prieto-Baños S, Fitzgerald LM, Yazdizadeh Kharrazi A, Oreshkov S, Dessimoz C, et al. When less is more: sketching with minimizers in genomics. Genome Biology. 2024;25:270. https://doi.org/10.1186/s13059-024-03414-4 Cheers Marco

1 0

Updated time for SeqAfrica Bioinformatics Community of Practice: 11:30 UTC/12:30 CET
by Christa Twyford Gibson 23 Oct '24

23 Oct '24

Hi all, Please note the change in time to our monthly SeqAfrica Bioinformatics Community of Practice. We will now be meeting at 11:30 UTC/12:30 CET. We look forward to seeing you at our next meeting on November 7! As always you can find us on Zoom at the link below. Cheers, Christa Christa Gibson is inviting you to a scheduled Zoom meeting. Join Zoom Meeting https://dtudk.zoom.us/j/68365887835 Meeting ID: 683 6588 7835 [cid:image001.png@01DB2527.3AA13FC0] Christa Twyford Gibson Project Manager for SeqAfrica Project Fleming Fund Regional Grant SeqAfrica (dtu.dk)<https://www.food.dtu.dk/english/topics/antimicrobial-resistance/seqafrica> chrgi(a)dtu.dk<mailto:chrgi@dtu.dk> +45 53 81 91 15 National Food Institute Research Group for Global Capacity Building Building 204 Henrik Dams Allé 2800 Kgs. Lyngby www.food.dtu.dk<http://www.food.dtu.dk/>

1 0

Reminder: COP tomorrow!!!
by Christa Twyford Gibson 09 Oct '24

09 Oct '24

Dear Colleagues, Just a reminder that our monthly Bioinformatics Community of Practice is TOMORROW 10 October at 13:45 CEST. The Zoom link for the meeting is below! Our colleague Albert Bortey from the Noguchi Memorial Institute for Medical Research will be giving us a demonstration of hARMonize. It should be super interesting! We look forward to seeing you all tomorrow! Christa Christa Gibson is inviting you to a scheduled Zoom meeting. Join Zoom Meeting https://dtudk.zoom.us/j/68365887835 Meeting ID: 683 6588 7835 [cid:image001.png@01DB1A4A.165EDF60] Christa Twyford Gibson Project Manager for SeqAfrica Project Fleming Fund Regional Grant SeqAfrica (dtu.dk)<https://www.food.dtu.dk/english/topics/antimicrobial-resistance/seqafrica> chrgi(a)dtu.dk<mailto:chrgi@dtu.dk> +45 53 81 91 15 National Food Institute Research Group for Global Capacity Building Building 204 Henrik Dams Allé 2800 Kgs. Lyngby www.food.dtu.dk<http://www.food.dtu.dk/>

1 0

Change of date for October Bioinformatics Community of Practice: join us on 10 October
by Christa Twyford Gibson 01 Oct '24

01 Oct '24

Dear Colleagues, Please spread the word- we are moving our monthly Bioinformatics COP to 10 October at 13:45 CEST this month. The Zoom link (below) is the same. Please let your colleagues know of the change! Cheers, Christa Christa Gibson is inviting you to a scheduled Zoom meeting. Join Zoom Meeting https://dtudk.zoom.us/j/68365887835 Meeting ID: 683 6588 7835 [cid:image001.png@01DB134E.CBB49D30] Christa Twyford Gibson Project Manager for SeqAfrica Project Fleming Fund Regional Grant SeqAfrica (dtu.dk)<https://www.food.dtu.dk/english/topics/antimicrobial-resistance/seqafrica> chrgi(a)dtu.dk<mailto:chrgi@dtu.dk> +45 53 81 91 15 National Food Institute Research Group for Global Capacity Building Building 204 Henrik Dams Allé 2800 Kgs. Lyngby www.food.dtu.dk<http://www.food.dtu.dk/>

1 0

2025

2024

Bioinfo List October 2024